Copasi2SedML

Copasi2SedML contains a library and tools that allow to convert a COPASI file containing a time course task to SED-ML L1V1.

This work is based on the COPASI C# bindings and libSedML.

Usage

To use the library, simply add a reference to LibCopasi2SedML.dll to your project, and ensure that the remaining files in the package are next to the binaries (remembering to include the native counter part to the COPASI C# bindings in your PATH|LD_LIBRARY_PATH|DYLD_LIBRARY_PATH. From there things could not be simpler as you can see in the code to the command line converter:

var converter = new Copasi2SedMLConverter(inputFile);
converter.SaveTo(outputFile);

Command Line converter

The command line converter expects two arguments, the COPASI input file, and the SED-ML output filename. If the output filename ends in .sedx (the format for the SED-ML archive) the archive will be produced, i.e: the model will be included together with the description.

CopasiSedMLExport.exe -f inputFile -o outputFile

License

Copyright (c) 2012 Frank T. Bergmann. All rights reserved.

Redistribution and use in source and binary forms are permitted provided that the above copyright notice and this paragraph are duplicated in all such forms and that any documentation, advertising materials, and other materials related to such distribution and use acknowledge that the software was developed by the . The name of the University may not be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.